PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676713688
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 405aa    MW: 44572.5 Da    PI: 9.1443
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676713688genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-0583103323
                ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                C+ C+k F r  nL+ H r H
  676713688  83 CEVCNKGFQREQNLQLHRRGH 103
                *******************88 PP

2zf-C2H214.40.00011157179123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k++  +s+ k H +t+
  676713688 157 FKCEKCSKRYAVQSDWKAHSKTC 179
                89*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-780103No hitNo description
Gene3DG3DSA:3.30.160.607.3E-680103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9781103IPR007087Zinc finger, C2H2
SMARTSM003550.02581103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355110122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.1E-6145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.08E-7152177No hitNo description
SMARTSM0035588157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSSSYNNTIS SSSTQSFLLA SAGTGTNNFN REETAMTMIQ QPNSVAPPPP PKKRRNQPGN  60
PNPDAEVIAL SPKTIMATNR FLCEVCNKGF QREQNLQLHR RGHNLPWKLK QKSNKEVRRK  120
VYLCPEPTCV HHDPSRALGD LTGIKKHYYR KHGEKKFKCE KCSKRYAVQS DWKAHSKTCG  180
TKEYRCDCGT IFSRRDSYIT HRAFCDALIQ ESARNPPSTN PNPGPTNFLM QCPSNQGLLA  240
QNDQNLMNQH GLISIGENIN SNNNNNLFNL GYFQDNAKHS DQTSVPSLFN NADNNDPSAL  300
LRGLTSSSSS SVVVNDFGDS DNGNFQGLMN SLAATTDHQG RSGSSIFDLH FGNNLSMGGS  360
DRLTLDFLGV NGGIVSNVNG RGGRNGPPLD VDMNFSNPNN PFGKA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00142DAPTransfer from AT1G14580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531830.0AK353183.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-E19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013677784.10.0PREDICTED: protein indeterminate-domain 6, chloroplastic-like
RefseqXP_013677785.10.0PREDICTED: protein indeterminate-domain 6, chloroplastic-like
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLM4DJL60.0M4DJL6_BRARP; Uncharacterized protein
STRINGBra016694.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-117C2H2-like zinc finger protein